Fission track thermochronology is a well established method for reconstructing the thermal histories of rocks with particularly important applications in tectonic studies, detecting low-grade thermal events, sedimentary basin analysis and resource exploration. These applications take advantage of the limited stability of fission tracks, especially in apatite, when exposed to the temperatures found in the upper 3-4 km of the crust. Apparent fission track ages in apatites can define an invisible 'stratigraphy' in otherwise homogeneous rock masses that can give valuable information on thermal, tectonic and erosional events. Quantitative modelling of the thermal annealing of tracks in apatite shows that distinctive profiles of apparent fission track age can be related to a number of simple thermal history styles. The main types of profile observed tend to be either an essentially linear decrease of apparent age with increasing depth, which relates to continuous uplift and denudation, or a concave-upwards profile produced by partial annealing in environments of tectonic stability or burial. More complex thermal histories produce compound profiles which are essentially just combinations of these two elements. Track length information allows the apparent age profiles to be interpreted in much greater detail. Examples of the major profile types have now been identified in various geological environments and can be analysed to give information about, for example, uplift and denudation rates, the timing of uplift or low-grade thermal events and maximum palaeotemperatures experienced during burial.